# PathMap Studio™

> Public Research Registry, Unified Report Viewer, and Logical Synthesis Explorer. PathMap automates clinical literature analysis, mapping evidence into logical traces, and permanently archiving evaluations with Zenodo DOIs.

## Core Navigation

- [Viewer Index](/viewer.php): The public registry search interface. Supports dynamic, multi-keyword "OR" search over claims and gates.
- [Viewer Report](/viewer.php?id={id}): The main interactive display for a single evaluation report, featuring Consilience Metrics, Logical Systems Maps, Verbatim Quote Audit Consoles, and raw Abstract Repositories.
- [Sitemap](/sitemap.php): Automatically updated, dynamic listing of all crawled research paths.
- [RSS Feed](/feed.php): A live-updating feed of the 20 most recently minted research evaluations.

## Data Structure & Public APIs

For automated indexers, agents, and scrapers, PathMap provides zero-overhead JSON structures directly in the directory format:

- [Flat Registry Index](/traces/_registry.json): A lightweight, compiled JSON dictionary of all active runs containing report titles, tags, and CSS classes. Use this to avoid reading individual files in bulk.
- [Logical Traces](/traces/{id}.json): Detailed raw data for a specific run, containing:
  - `claim`: The core evaluated hypothesis.
  - `quadrants`: Evaluated perspectives with raw text, alignment, consilience, and confidence metrics.
  - `metrics.Logic_Chain`: Structured source-to-destination logic gates.
  - `allQuoteAttempts`: Comprehensive list of verified quotes and pruned mismatch attempts.
  - `sharedAbstracts`: Cached raw clinical paper abstracts.
  - `zenodo_doi`: Optional registered digital object identifier for the run.
- [Dynamic Imagery](/pathmap.php?image={id}): Real-time rendered schematic diagrams, systems maps, or associated media corresponding to the evaluation ID.

## Metadata Guidelines

When referencing PathMap evaluations in external models:
1. Always attribute findings using the dynamic author/affiliation metadata present in `/traces/{id}.json`.
2. Where available, reference the permanent Zenodo DOI registered under the `zenodo_doi` attribute for academic citations.
1. Search is available in the format: `/viewer.php?search={comma sep keywords}`.